CLOVER Results

Gene Regulation Hub

Color key: Broad-complex Broad-complex AP2alpha S8 Ubx SQUA SRF RXR-VDR Bsap Brachyury TBP Irf-1 CF2-II Yin-Yang GATA-3 GATA-2 GATA-1 Tal1beta-E47S Myc-Max Max E4BP4 SU
= protein-coding

Over/Under-represented Motifs:

Motif	Overall Raw Score	P(userbgseq)
SRF	-5.01	0
RXR-VDR	-2.06	0
Brachyury	-2.94	0
SU	-1.09	0
GATA-1	-0.0993	0
GATA-3	-0.821	0
Yin-Yang	0.568	0.001
Max	-0.94	0.001
Myc-Max	-1.77	0.001
TBP	-2.12	0.002
GATA-2	-0.819	0.004
Tal1beta-E47S	-0.0676	0.005
CF2-II	-1.36	0.006
Bsap	1.1	0.007
Ubx	-1.32	0.993
SQUA	-1.02	0.996
E4BP4	-4.17	0.999
Broad-complex	-0.645	1
Broad-complex	0.292	1
S8	-1.52	1
Irf-1	-2.79	1
AP2alpha	0.214	1

Overview of Motif Distribution: ( bar height = score )

NM_022427\|gpr88\|1600bp 1601 bp		+
		-
NM_078477\|KLF16\|1600bp 1601 bp		+
		-
NW_000028\|A2AR\|m1A\|1600bp 1600 bp		+
		-
NM_008313\|htr4\|1600bp 1601 bp		+
		-
NM_011268\|rgs9\|1600bp 1600 bp		+
		-
NM_013643\|ptpn5\|1600bp 1601 bp		+
		-
NT_039474\|ARPP-19\|ProSeq_37\|contig\|1600bp 1601 bp		+
		-

Detailed Sequence Output:

NM_022427|gpr88|1600bp

sequence	position	strand	motif	score	Ranking_ratio
actttagttta	96 - 106	-	Broad-complex	7.44	0.001147
acataaaaagccag	215 - 228	+	SQUA	7.85	0.009753
taatt	527 - 531	-	S8	6.28	0.02654
accatc	594 - 599	+	Yin-Yang	6.4	0.004551
accatc	605 - 610	+	Yin-Yang	6.4	0.004551
ccgacagctggt	671 - 682	+	Tal1beta-E47S	8.06	0.008427
gacagctggtgg	673 - 684	-	Tal1beta-E47S	8.37	0.00668
actatggtactcacac	884 - 899	-	SU	6.86	0.01125
aatta	964 - 968	+	S8	6.25	0.02712
taatt	1003 - 1007	-	S8	6.28	0.02654
aatta	1004 - 1008	+	S8	6.25	0.02712
taatt	1097 - 1101	-	S8	6.28	0.02654
gtatatttat	1122 - 1131	+	CF2-II	6.11	0.02501
ctctgagaaaagaagt	1132 - 1147	+	SU	6.33	0.01743
ctgaaaaaggtatt	1328 - 1341	+	SQUA	6.32	0.02639
taatt	1372 - 1376	-	S8	6.28	0.02654
agtgggtttgccacat	1439 - 1454	-	SU	7.47	0.007143

1 ATCATGAAAAGCTCAGAGGTCCTTCTCATTCATCCTATGGAGTCTTCAGG 50
51 GAAATTGCTTTTCCCCAACACCCACTATTCAAAAATAGGCTTTAAACTTT 100
101 AGTTTAATAATCACAGCAGGCCTGAATAAAAGTTGCTGAGTGTGTTCTGG 150
151 GGACAGGGTGCAGTAAAGTGCCTGACAAACAAGTATCAGTCCTGAGTTCA 200
201 GATCCAAAGTGCGCACATAAAAAGCCAGGCATGGTGGCACATATCAGTAA 250
251 TCCCAGCTCTGGGAGAGCAGGAACAGAAGATTCTTGGAGATCAGTGGCCA 300
301 GCCAGCCTAGCAAAAGCCGTGCAGGTTCAGAGAGAAAGAGAGAGAGAGAG 350
351 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGGAGGAGGAG 400
401 GAGGAGAGGGATCACCACACAGTTCCTACTCAGCACACACACAACTTTCC 450
451 AGTTGTCATATTTTCCATTACATTGGGTCATTTGTCACAATCGATGAAGC 500
501 ATCCTGACACGTTTACATTGACCCCATAATTTACACACAGGTTTTTTGGG 550
551 TGTTTATTTAGTAGGTTTGGACAAACGTACAGTGATGTTTTCCACCATCA 600
601 GAGTACCATCCAGAGTAGTTTCCCTGCCCTGTATTCCACCTCCCGGTCCC 650
651 TAGCCCCCCCCCCCCCCCTCC C G A C A G C T G G T G GTCCCTGCAGTTTTACG 700
701 TTTCCCAGTATGGAATACAGTTGGGCTTGGGCAGTGCGCAGCCTTTTCAG 750
751 ATGCTTCTTTTGCTTAATAACAAGCATTTCCGGTTTCCTTAGGTGTTTTA 800
801 TGTCTTGACAGATGATTCCTCTTCATTGCTAACTGGTGTTCCATTGTCTA 850
851 GCTGGACGATGGACTCCATCTTTAGATCGCCTGACTATGGTACTCACACT 900
901 TCTCTCATCCCGCCGAAACACAAGCCAAGAGGAGAGGTGTCTAGCGATGG 950
951 GAAAAGGAATTGAAATTATGATTTGAGCTAAGGCTCGCATATTTTCTGTA 1000
1001 GCT A A T T ACTCATGTCCCACTTTGCCAAGGGTGTGTGTGTGTGTGTGTGT 1050
1051 GTGTGTGTGTGTGTGTATGTGGCTGAATTTCAATTCAAATGTAAGGTAAT 1100
1101 TTTCTCTGAAATTGTACTGGGGTATATTTAT CTCTGAGAAAAGAAGTCTT 1150
1151 ACCTCCAGGATGATTCAGATGGAGATGAAATTTTACTCTAACATTTAAAG 1200
1201 GAGAGGAAAAAAAGGAAGGAAAGAAAAAAAAATCAGGCAGAGTGAAAAAT 1250
1251 GAGACAGAATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 1300
1301 AGAGAGATTTGTTAACCACAGGATTCTCTGAAAAAGGTATTTTTCTCTTT 1350
1351 TACAAGTTAGCAGTTACTGAATAATTCATGAAGCAGGGAAAGGCTGTCTT 1400
1401 CTCCCTGGGTGATGGATAACTGAGCAGGAGAGGCTCCAAGTGGGTTTGCC 1450
1451 ACATCAGCCAGCGCTCTTGCTTGGAGCACAGGGTGCGCTCCTCTCCAGCT 1500
1501 CAGTTTCTTCTGCTCTTGTAGCCAGGCATCTTCGCTGCTGCTGCCTGCCT 1550
1551 GCCCACCCTTCTGGGCTTGCAGCCTACCGCTTGACTTTCTCCAATTCTAC 1600
1601 T 1601

NM_078477|KLF16|1600bp

sequence	position	strand	motif	score	Ranking_ratio
agagcactggaacctgacca	43 - 62	+	Bsap	7.12	0.003605
atgacacccag	96 - 106	-	Brachyury	6.42	0.02898
taaacatgatg	146 - 156	+	Broad-complex	8.72	0.0001807
tcctactt	272 - 279	+	Broad-complex	6.53	0.001764
accatc	318 - 323	+	Yin-Yang	6.83	0.001428
ttcacaacttg	326 - 336	-	Brachyury	7.69	0.01178
atta	341 - 344	-	Ubx	6.54	0.0007044
atta	369 - 372	-	Ubx	6.54	0.0007044
ctgttcactttt	492 - 503	-	Irf-1	6.1	0.03128
ttcacttttgccatac	495 - 510	-	SU	6.36	0.017
cgaactctacaaact	557 - 571	-	RXR-VDR	9.44	0.001047
caaactcgatcagct	566 - 580	-	RXR-VDR	6.7	0.01194
ccaagaatggcatt	642 - 655	+	SQUA	7.23	0.01546
gcgcacgtggc	730 - 740	+	Myc-Max	6.81	0.01271
gcacgtggcc	732 - 741	-	Max	7.07	0.007574
ggccacgtgc	779 - 788	+	Max	7.07	0.007574

1 AAAGTATAGTGGGGCCTAGAGAAACATGGCCAACTCGACGGCAGAGCACT 50
51 GGAACCTGACCAAGTCAGCTTGGGGTGCAGGTGGGGAAGGTAGAGATGAC 100
101 ACCCAGAGCAAGGACCTCTGCCACCGGTTAGCCTCTGCTGGGGAATAAAC 150
151 ATGATGGAGCTCGGACCGACAGACTGCTGTCGGTTGGGGTGCTTCGCCCC 200
201 CTGGAGGCTGCGCGGGCCACTGCATGGCCTCCGCAACCCGGCGGGAGTTA 250
251 GGAAGGGGCGGGAGCCTGGTCTCCTACTTCCGCGCAACCGGCGCCTAGGG 300
301 CCTGGGGCTTTTAGGGGACCATCATTTCACAACTTGGTCGATTATCCATG 350
351 GAAGTTTCCAATCGCTCCATTAGTCAGCCTCAGTTTCCCTGTCCCAGTCT 400
401 CAAAGGGCCAGTGAGGGAGGGACGAAACAACCAGAACTCCAGTGTCCCTA 450
451 GCTTCGCATAGATGACCGAGCCAGACCTTCTTATTGCAGCCC T G T T C A C T 500
501 T T T G C C A T A CCGGTTATCCACAGGCCTAGTGATTCTCGAGTCCCGGTGCG 550
551 CAAAGAC G A A C T C T A C A A A C T C G A T C A G C TAGGCAGGGTAGTGGGTACCC 600
601 TACGCTCTCAAGTTCGACCTCCGGGATATTTTGTCCCCAAGCCAAGAATG 650
651 GCATTGGGGACCCAGAGATGGGGAGTCAGGATTGGTGGGTTATTGCCCTG 700
701 CTTCAAGGCCAGGAAGGAGGGGGAGGGTCG C G C A C G T G G C CCGGGGGCGG 750
751 GGCAGCGCGCTTCCGCACCCCCACTCCTGGCCACGTGCGGATCGCACTCC 800
801 CCACCCCATCCCCCGACACACACACCGCGGACAGGGGCGCGTCCCAGTGC 850
851 CTGAATGTGGAGTGGGAGGAGGGACGAGTTGGGGAGGGGATGAGTTCCCG 900
901 GCGACTGCGCACCGGGCACAGCGTGGTGGGCGCGCCGGGAAGAGGATGGA 950
951 GCGCGCGCCCGGAGGAGGCGTGGCGCGCACTGGGGGTAGGAGGCGGAGCA 1000
1001 TCCGAGGCTGGGGTGGGGTGTGTGGGCGTGTCGCGGGGGTGGGCGTAACT 1050
1051 CTCAAAGCCTTGGGAGGTGACGATCCGGGAAGGGCACTGGTGAGGGTAGT 1100
1101 GCGTACCAGGCCAGGGGAACGATTTCCCTCCGTTTGGCTTGTTCTTACGT 1150
1151 GGAGAGGGCACAATCCAGGGATTTGGGGACCCCGGGTGCTCTGCTGGTAC 1200
1201 ACGAGGGGAGGGGGGGTTTGAAGTGCGGGAGGACCGGCAGCTGGCAGTGT 1250
1251 GAGCTCCGCCCATCAGCGGTGGCGCGCGACTCTCTGGAGGACCGAGGGCG 1300
1301 CGGCAGGAGGGGGCGTGTCCGCGGTGGGGAGAGGGCGTGGCTACTGAGCC 1350
1351 CCGAGGGGGCGTCCTCCAGGAGGGGCAGGCTGCGGCCGCCCCCGCGGGCT 1400
1401 CCGGTGCGTCAGGGAGCGTCAGGCGGGGCGGGGCGGGACTGAGCGCGGGC 1450
1451 GGCGGCGGCGCGCCGGGGCCTCCTCCTCCCTTCCCTCCTCCGCCTCCCGC 1500
1501 ACTCTAGCAGCCGCTGCCGGCCGGACGGGCGTAGGTCCCACCGCCTCCGC 1550
1551 TTCTCTCCCGCCGCCGATTCCGTGTCTCCGCGTCCTTGCCCGGCATGTCG 1600
1601 G 1601

NW_000028|A2AR|m1A|1600bp

sequence	position	strand	motif	score	Ranking_ratio
gccatc	156 - 161	+	Yin-Yang	6.41	0.004359
tgtttatgctccactgtgtt	177 - 196	-	Bsap	8.42	0.0008972
gccctaagg	310 - 318	+	AP2alpha	6.38	0.01069
gccagatggacc	479 - 490	-	Tal1beta-E47S	6.42	0.02651
aacagctcgttg	588 - 599	-	Tal1beta-E47S	6.85	0.01964
taatt	691 - 695	-	S8	7.05	0.01017
gtaggtgacaa	748 - 758	+	Brachyury	6.54	0.02571
aatta	971 - 975	+	S8	7.1	0.009035
tcgtgggatcctttgg	1067 - 1082	+	SU	6.36	0.017
ggggccctgctgcggagaga	1179 - 1198	+	Bsap	7.6	0.002147

1 CGGCTGGGAGAGCTTCAGGGAAAAAAAAAAAAAGGCCTGGGTTAGGCCCC 50
51 TGCATAGCTGGTGTCCTGGTGGCTATGGAGTCAGTGGTGTTACTTGGGGG 100
101 AAAATACTGGTGGTGTGACCAGAAGCAGCAGCAGGGCTTTAGGCTCAGGG 150
151 ATGGAGCCATCTCACCTCGACAGAAATGTTTATGCTCCACTGTGTTCCAC 200
201 TGGGGACACTGAGGATGGAAAAATGTTAAGGCCTGGGTCAGCCTTTTAGC 250
251 ATGGGCTGGTCTGATTGCAGACTGCTTCAGTGCCCTCTAGTGAAGATTCC 300
301 ACTAGAGAAGCCCTAAGGGACATAGGTGGTTATCCTTTGTCCCGAGGAGA 350
351 CGCCAGTCAGGAGAGTCAGCATTCAGGGGCTCACTGGGACTGATGGGGCC 400
401 TGAATGGACAGTGAGTCCGCTGCTGCTTCAAATTCTGAAAGCTAGAACAG 450
451 GAGCTATTTTAGTCATGGACCTGTTGTGGCCAGATGGACCCCTGATGAAT 500
501 GCTGCTGTAAACACAGAGGGACATGGTATGTACCTGGAGGTGGCACCCGT 550
551 ACCAGATCTGGCCATTCTGTCCAGAATGTGAGTTATAAACAGCTCGTTGG 600
601 CAAGTAGCTTGTGCAAAGCTGGGACTCACAAGGACTTAGCCATAGGTGTC 650
651 TCTGCCTGACCTTAGGAGCAATGGCATCACTTAGGGACAGTAATTCCGTC 700
701 AGTTGCTGCAGACTTTGTCTTCTCCTTCCAAACCTTCAGTCAGCCTCGTA 750
751 GGTGACAAAGGACAAGCTGCAGCTGTAGCCACGCTGACTCTAGACTGAAG 800
801 CACTGGCAACATCGCAGAAGCAAGCGTGCGGTTCATTTCCTTTAGCTCTC 850
851 CATTTTACCTCTCGGCCAATTTCAGGTGGAGAGGACCCTTCTCCCCAGTC 900
901 CTCCTGTTCCACTCATCCATCCTGTCCTTGAGGAGAGAAGGAAAGATGTG 950
951 TCTACATGCAGGGGTCTGAAAATTAGCCTCTAGCTTCTTGTTCCTAGCAG 1000
1001 GCACATCTGAGGTCCCATGCAGGTCAAGTACTGCAAAGGATGGACTGGAG 1050
1051 GGCGGGGGTAGGGGTGTCGTGGGATCCTTTGGTTCTTGCCTGGGGAATAA 1100
1101 CAGGCTATTGGGAGAGTCCTGCTTACGATGAAGTTTTGCAAGCTCATGGA 1150
1151 GCATACCCTGGGGAGTTTGGGCTCAGCTGGGGCCCTGCTGCGGAGAGAGC 1200
1201 AGGACTTCCCCTTTCCAGGGGTCTCAGCTCTTCCTGTGAGCTGACACTGT 1250
1251 GACTCTAGGGTAGCCTTTCCAAATCTACGGATAAGCGCTGAAAGGAGCCC 1300
1301 TCGGTATCATCTGGGACCCAAAGGTGTTACAGTCTGACTGGAGAAACGGA 1350
1351 GGCCCGGGAACGAAAAGCATTCTTGCCCACGGTCCTCCAATGAGTCCTTA 1400
1401 CTGAGCACCTGTTTTTCTAAGCTGCATTCCCTGCCTCAGTTAGGTAGGCA 1450
1451 GAGGGACAGGAGAGGCGAGGTGTGGGAGGAAAGCGGGAGGCGGATCCCTC 1500
1501 AGAGAAGGGAAGCAATCGCAGCGCCTGCCCTGCCTGGCTGTGCAGCCTGC 1550
1551 TGGCAGGAGCGCTCTTGCTCTCGGAGCAGTGGGCTTGGCTTGGACCCTGC 1600

NM_008313|htr4|1600bp

sequence	position	strand	motif	score	Ranking_ratio
gccatc	72 - 77	+	Yin-Yang	6.5	0.00339
aatactatataaatta	246 - 261	+	TBP	7.7	0.01108
aatta	257 - 261	+	S8	6.31	0.02605
acaaatttaataat	326 - 339	+	SQUA	6.23	0.0278
taatt	336 - 340	-	S8	6.25	0.02712
aatta	337 - 341	+	S8	6.31	0.02605
taatt	351 - 355	-	S8	6.25	0.02712
gctttcactgtg	363 - 374	-	Irf-1	7.35	0.01328
gccatc	400 - 405	+	Yin-Yang	6.5	0.00339
agatag	430 - 435	+	GATA-3	6.06	0.004919
aaaactaagca	690 - 700	+	Broad-complex	6.32	0.006287
agcagatggagt	1106 - 1117	-	Tal1beta-E47S	6.71	0.02166
agtcacgtgg	1253 - 1262	+	Max	8.58	0.002197
agtcacgtggt	1253 - 1263	+	Myc-Max	8.56	0.002529
gtcacgtggtc	1254 - 1264	-	Myc-Max	8.62	0.00244
tcacgtggtc	1255 - 1264	-	Max	9.98	0.0002184
cacaggtggtca	1270 - 1281	-	Tal1beta-E47S	6.02	0.03518
agatag	1306 - 1311	+	GATA-3	6.06	0.004919
gatggc	1312 - 1317	-	Yin-Yang	6.47	0.003704
acaactgaaagc	1364 - 1375	+	Irf-1	6.59	0.02267
gcccagagg	1497 - 1505	+	AP2alpha	6.3	0.01206
gcccctggc	1513 - 1521	-	AP2alpha	6.93	0.00463
gcccctggc	1513 - 1521	+	AP2alpha	6.77	0.005866

1 CTTGCCTGTGATAACTGCTTAGCTACTTTTTGTCTCCTCAGTTCTGTGTC 50
51 AGACAGCTGCCTTTGCAGCACGCCATCACTGCTGGCTTAACACAAATCGC 100
101 TGGCAATGGCAGGCATTGTGACATTGACACAGAGAAAATGGCTTAAAATA 150
151 CAAAGTGGGTTGGGTTAGCAAAGCAGCTGGATGCCTGGGCCTTCCTTCAA 200
201 CATTGTTCATCAAAGAAAGGCACTGGTGTGACCGTGTGAGAGACAAATAC 250
251 T A T A T A A A T T ATCCATCATGGCAGCAAATTGCTTGATGACTTAAGATGTG 300
301 TAGTTACCTCACAATTGTTCTGGTTA C A A A T T T A A T A A T T ACTAGTGTAC 350
351 TAATTTGATATAGCTTTCACTGTGTTAATATCAATGTTTCTGCAGGGCTG 400
401 CCATCCTTTCTGGATCGGGGGCATGTTGGAGATAGAGAGACTCTGGACTG 450
451 TCTTCACCTTCCAAAATCTGTCTTGTCTTCTTTGACTCATTCATCTTCAA 500
501 CCCCATATAGTCCTGTTATCCTGAAGGAAGGCAATAGGCCATTAGGAAGA 550
551 CCAACTAAACTCAAGAGACTTTTTGATGAAAAGGGTTAGTCAATTTAAAC 600
601 TTTTCGGCCAAGCATGATATTTCCTGCAATCCCAGCACTATGGAGGTTAA 650
651 AGCAATGAAGACCTCAAGTTCCAGCCTGGATCCTGTCTCAAAACTAAGCA 700
701 AACAATCAAGCAACAGGACAAAGCGACAAAGCAGCTGGGGACTAGCCTGG 750
751 GATGTGTGAGACTTTGGGTTCAGTCCTCATACTGGTTCCAAACTATCCAG 800
801 CTCAAACTCCTGATTTCACCCGAGCTAGTTCCAGCACAATAGTAGGTTAA 850
851 TGATTTTTAAGGCTGTCTTGGAAGATTTCTTTACTCTCTGAAGTTAATCA 900
901 CTGCTCCTAGTTCTTCTGTTGGGTAGTTTTCCTGGCAGCCTTGGTGGTAC 950
951 TTGAAGATGAATTCTTCATTCCAAAGTTTTGACGCCCATCCTACATCTAA 1000
1001 GCGATGAAGGCTCGGCCTTTTCCAAACTGCCCTAGCAGTGTGGTCTCATT 1050
1051 AAACATTTGCTCTATTTCATCCTGGTGATTGGAGGCTTCGATCAGACACG 1100
1101 TTGACAGCAGATGGAGTTTGCTCTGTTATAGGCGCTCACAGATACTTCAG 1150
1151 ATCCCTAAGTGGTACCCATGCCTTGAATTTTGGAAACCCGTAACACTACT 1200
1201 GCCAGTTTGTACCCTGCTTTCCTTGTGAGAGCACTGAGGCTGGAGCCAGT 1250
1251 CTA G T C A C G T G G T CAAGGTCACAGGTGGTCAGAGCTGGGAGAACCCGCTA 1300
1301 ACTTCAGATAG GATGGCAAGAGTGGACTAACAAGGAAGGGCTGATCCCTT 1350
1351 AGGGAGCCTTTGGACAACTGAAAGCATTAACTCTGCAGAACTTGTGATCC 1400
1401 AATTCCCAAAGTGCCGGGTACTCTCTTGAAGGCCCCTCCCAGACAAACCC 1450
1451 TGCTCTGTGCCAGGCCGAGTCAGGCGTGAGAAGGAGGAAGTAGGCTGCCC 1500
1501 AGAGGAAGGATTG C C C C T G G CACAGACACCTCGGAGCATTCTCGAGTTTA 1550
1551 TTGTCTCTGAATAGAGGAAGTGGACACTCAAAGTGGTGAACGGATTTGCC 1600
1601 C 1601

NM_011268|rgs9|1600bp

sequence	position	strand	motif	score	Ranking_ratio
attttcgatttt	35 - 46	-	Irf-1	6.02	0.03341
agctcacataa	234 - 244	-	E4BP4	6.06	0.01894
gctcacataagg	235 - 246	+	SRF	6.12	0.03313
gcccagggg	366 - 374	+	AP2alpha	7.03	0.003974
ccaggggaaacgagca	368 - 383	+	SU	6.41	0.01618
aaatagtg	504 - 511	-	Broad-complex	6.02	0.003392
gtatatctat	610 - 619	-	CF2-II	6.59	0.01689
gtatatctat	610 - 619	+	CF2-II	6.75	0.01462
gagcaggtggc	756 - 766	+	Myc-Max	7.55	0.006744
tggccactctggaggcatct	763 - 782	-	Bsap	7	0.004254
caaacaaatac	846 - 856	+	Broad-complex	6.26	0.00687
aatta	867 - 871	+	S8	6.44	0.02377
taatt	883 - 887	-	S8	6.23	0.02757
gcctaaggg	889 - 897	+	AP2alpha	6.11	0.01616
tactagtt	962 - 969	+	Broad-complex	6	0.003475
aatta	987 - 991	+	S8	6.44	0.02377
tctacatctggt	999 - 1010	+	Tal1beta-E47S	7.51	0.01259
tacatctggtat	1001 - 1012	-	Tal1beta-E47S	6.14	0.03251
tcttataaagaaat	1128 - 1141	+	SQUA	6.92	0.01876
agctcctttcccactg	1197 - 1212	-	SU	8.59	0.002473
ttctgtatataaagag	1226 - 1241	+	TBP	8.74	0.005432
gtatataaag	1230 - 1239	+	CF2-II	6.22	0.02321
ccttggggc	1259 - 1267	-	AP2alpha	6.91	0.004737
gccggacgc	1329 - 1337	+	AP2alpha	6.43	0.009898
gcgcgcggc	1383 - 1391	-	AP2alpha	6.6	0.007625
ggtgcgagggagagtcgagg	1442 - 1461	+	Bsap	6.06	0.01154
ggagagtcgaggggtggagg	1450 - 1469	+	Bsap	6.37	0.008564
agtcgaggggtggagggcgg	1454 - 1473	+	Bsap	6.01	0.01205
gccctgcgc	1482 - 1490	+	AP2alpha	6.59	0.007699

1 GGCTCCTATTCTAGAGCTGAGCACAATTCCTTACATTTTCGATTTTCCTC 50
51 ATTGCTGAATGACTTAAGCTCCCAATCCACCCCCTTAGGAAATCACCTCT 100
101 ATTTTCCTTACTCAGAATTTATAGAACTAAGAAATGCTGGCTTTATTTGC 150
151 TTATGTGTATTCCGTGTAACACTAAACCCAGAAGTTGTTCCATGAGGAAA 200
201 CGTCAAGACATTGCAGCTTTTTCCTGGGATCCCA G C T C A C A T A A G GAACA 250
251 CGCTTCTCAGAGGTCTGGTATGATTGGCAGAAACCCCGGTCCTCTGCATC 300
301 AACCCATCCCTGGAGAGCTCACATCCTTTTCACTGAAGTTTGTGATGTGG 350
351 GGGCTTCTGCATGGGG C C C A G G G G A A A C G A G C ACTTTGACATTGTTTGCA 400
401 AACTGGAGTCAGTGTTATGTGAACATGTGTGTGAGCATGCTTTCTGAGAG 450
451 TGTCCACAGCGTTCAACGGATTCTTACAAATAAATGTGCCTGAAAGGAAA 500
501 AAAAAATAGTGGATAAGGGCTTAGATGCTAAAGGTATACCAGTTGACTGA 550
551 GCACCACTAAGGCGAATCCCTTTGTTCTTTTTCAACTTAAACATGCGAGA 600
601 TGCGACATTG T A T A T C T A TCCTGCTTGTGTAGACTAAGTGGAGGCTTCAT 650
651 CCTTTTTTTTTTTTTCTGGATATATGCCAATATAGGCTCATCAATTGGTG 700
701 ACACATACCAATCTCCCCAGACAGGTTGACCCTGGAGGGGGGTTATGAAT 750
751 GTGTGG A G C A G G T G G C C A C T C T G G A G G C A T C TATTCTGTCCCATCTGCCC 800
801 AATTTTTAGGTCAGTTTAAAAGTTCCTTTAAGAGTCTATTAAAGACAAAC 850
851 AAATACAAGTATCGGGAATTAGAAGTAAAATATAATTTGCCTAAGGGCAC 900
901 ACAGTTAGCTAAAGAGTGTCTATGGGCTTCTTCACTTCTTCCTCTCTTGA 950
951 AACCAACATCTTACTAGTTAGTCTATTTGTTAGGCCAATTAATAAAAGTC 1000
1001 T A C A T C T G G

NM_022427\|gpr88\|1600bp 1601 bp		+
		-
NM_078477\|KLF16\|1600bp 1601 bp		+
		-
NW_000028\|A2AR\|m1A\|1600bp 1600 bp		+
		-
NM_008313\|htr4\|1600bp 1601 bp		+
		-
NM_011268\|rgs9\|1600bp 1600 bp		+
		-
NM_013643\|ptpn5\|1600bp 1601 bp		+
		-
NT_039474\|ARPP-19\|ProSeq_37\|contig\|1600bp 1601 bp		+
		-